AAV Serotypes for Intravenous Gene Therapy (1)

Today, I wrote a bit about AAV serotypes and doses, and target organs, inspired after reading Reporter’s notebook 

CAP-002 case

clinical fatalities and the limits of IV-delivery

A child died in Capsida’s CAP-002 trial in September 2025,  the first patient treated with an engineered, IV-administered, BBB-crossing AAV for STXBP1 encephalopathy. 

Capsida Biotherapeutics voluntarily halted the SYNRGY trial (NCT06983158) after the first treated paediatric patient with developmental and epileptic encephalopathy (DEE) caused by STXBP1 mutations, died. The cause of death remains under investigation. CAP-002 is notable because its capsid was specifically engineered to cross the blood-brain barrier (BBB) via IV infusion, without intracranial injection. Regulators did not enforce the hold. However, Capsida self-imposed it while searching for the root cause.👍


Now, we should check some adverse events linked to IV AAVs. 

Reported patient deaths linked to IV AAV by serotype
SerotypeDrug / companyIndicationCause of deathStatus
AAV9Zolgensma (Novartis)Spinal muscular atrophy (SMA)Acute liver failure (ALF)2 deaths, 2022 (Zhang et al.)
AAV9Multiple high-dose trialsVarious CNS / neuromuscularThrombotic microangiopathy (TMA)Multiple cases (Zhang et al.)
AAV9 (NGN-40)NeurogeneRett syndromeRare hyperinflammatory syndrome1 deathPhase I/II (Joshua Silverwood)
AAV9-based (RP-A501)Rocket PharmaceuticalsDanon diseaseFatal acute systemic infection1 death, Phase II (Annabel Kartal Allen)
AAV8ASPIRO trial (AT132)X-linked myotubular myopathy (XLMM)Cholestatic liver failure4 deathsPhase I/II (Shieh et al.)
AAVrh74Elevidys (Sarepta)Duchenne muscular dystrophyAcute liver failure3 deaths (Annabel Kartal Allen)
Engineered AAV (CAP-002)Capsida BiotherapeuticsSTXBP1 encephalopathyUnknown — under investigation1 death, Sept 2025 (Annabel Kartal Allen)

What the AAV5 story teaches us

Now, we have to think about AAV5’s successful story. A decade of relative safety, why?

In August 2022, Europe approved the world’s first AAV5-based gene therapy for severe hemophilia A – Roctavian (valoctocogene roxaparvovec), developed by BioMarin. The FDA followed in June 2023. Since Phase 1/2 trials began in the mid-2010s, hundreds of patients have received a single IV infusion of AAV5, and to date, no patient deaths have been directly attributed to the therapy. In a field where other AAV programs have seen multiple fatalities, this is a notable record.

Hemophilia A is caused by a missing clotting protein (Factor VIII) that is normally made in the liver. So the therapeutic goal of Roctavian is simply to deliver a working gene to liver cells  and the liver happens to be exactly where AAV naturally travels after an IV injection. The vector does not need to fight its way past any biological barriers. It goes where it was always going to go.

So what makes AAV5 different? The answer is not the stereotype itself [I think, and some others would agree with me although it is some part of stories].  


The dose matters. 

Because the liver is the natural destination for IV-delivered AAV5-based gene therapies, a relatively modest dose is enough to achieve a therapeutic effect in hemophilia. Roctavian is given at 4–6 × 10¹³ vg/kg, roughly half to a third of the doses used in CNS or muscle-targeting programs. That difference in dose is, in large part, the difference between a therapy with an acceptable safety profile and one that has killed patients.

Why does the target organ change everything?

Think of it this way. When you give AAV through an IV, the vector enters the bloodstream and travels throughout the body. The liver acts like a sponge as always. It absorbs a large fraction of whatever AAV is circulating, regardless of where the doctor wants it to go. This is simply how our body works.

For hemophilia, this is actually favorable: you want the gene delivered to liver cells, and the liver is already soaking it up. A dose of 4–6 × 10¹³ vg/kg is enough to transduce enough liver cells to restore Factor VIII production. The liver handles this dose without triggering a dangerous immune response in most patients.

But for diseases of the brain or muscle, the liver is an obstacle, not a destination. To get enough AAV past the blood-brain barrier or into muscle tissue, you have to flood the entire system with a much larger dose, often 2 to 10 times higher. The liver still absorbs most of it, now overwhelmed by vectors it was never meant to receive in such quantities. The result, in the worst cases, is acute liver failure, immune storms, or vascular damage.

The safety record of AAV5 in hemophilia is genuinely encouraging, but it would be a mistake to conclude that AAV5 is simply a “safe” serotype. The real lesson is more specific and more important: IV gene therapy works best and most safely when the target organ is the liver. AAV5 has never been tested at the doses that CNS or muscle delivery would require, so we simply do not know how it would perform in that context.

What the full clinical picture tells us is that the moment gene therapy asks AAV to travel beyond the liver via IV, the dose requirements climb into a range where serious toxicity and death become real risks regardless of which serotype is used. AAV8, AAV9, and AAVrh74 have all produced fatal outcomes in this higher dose regime. Engineered capsids designed to cross the blood-brain barrier represent the field’s attempt to break this trade-off, but as the September 2025 death in Capsida’s trial shows, even the most advanced designed next-generation vectors carry unknowns that only human trials can reveal [The dose not disclosed yet]

A lower dose of IV gene therapy targeting other organs might be successful, which underscores the need for more efficient AAV engineering or local injection to resolve these matters.


Reference

Annabel Kartal Allen. “Child Dies in Phase I Capsida Gene Therapy Trial.” Child Dies in Phase I Capsida Gene Therapy Trial, Clinicaltrialsarena, 12 Sept. 2025″

Joshua Silverwood. “Patient Dies in Neurogene’s Phase I/II Rett Syndrome Trial.” Patient Dies in Neurogene’s Phase I/II Rett Syndrome Trial, Clinicaltrialsarena, 22 Nov. 2024″

Shieh, Perry B., et al. “Safety and Efficacy of Gene Replacement Therapy for X-Linked Myotubular Myopathy (ASPIRO): A Multinational, Open-Label, Dose-Escalation Trial.” The Lancet Neurology, vol. 22, no. 12, Dec. 2023, pp. 1125–39. DOI.org (Crossref)

Zhang, Wenwen, et al. “Comprehensive Analysis of Adverse Events Associated with Onasemnogene Abeparvovec (Zolgensma) in Spinal Muscular Atrophy Patients: Insights from FAERS Database.” Frontiers in Pharmacology, vol. 15, Jan. 2025, p. 1475884.

Antibodies: From immunization to Screening


Quite a long time ago, during my Ph.D. studies, the process of generating new antibodies to study novel molecules typically began with producing proteins for immunization. This involved creating expression vectors for the full-length protein, extracellular domains, or specific regions, or synthesizing peptide fragments. The proteins were then used to immunize mice, rabbits, or ferrets, with repeated boosts to obtain sera containing polyclonal antibodies. Next, B cell hybridomas were generated, and individual hybridoma cell lines were established. These lines were screened using techniques such as Western blot, immunoprecipitation, and other immunoassays to identify antibodies that were effective for the intended research purpose.


Currently, we observed antibody based drugs such as anti-VEGF and anti-TNF. So I talked about antibody libraries today.


Discovering the Right Antibody: How Antibody Libraries Speed Up the Search

To find an antibody that targets a specific antigen, scientists must sort through billions of possibilities to find the best match. That might sound impossible—but thanks to antibody libraries, this search is now faster and more efficient.

Also some antigens, particularly secreted or membrane proteins, are very difficult to produce antibodies because of the high similarity between the human protein and the immunized animals’ own (self vs non-self problem). Using a library can be a good starting point to identify antibodies.


What Are Antibody Libraries?

An antibody library is a large collection of antibodies with diverse binding properties. Researchers can screen these libraries to find antibodies that tightly bind to a chosen target, such as a virus protein or disease marker.

There are three main types of antibody libraries:

  1. Immune libraries – made from individuals who have already been exposed to the antigen.
    • Pros: Naturally evolved, high-affinity antibodies.
      • Cons: Limited to one specific antigen.
  2. Naive libraries – made from donors who have not been exposed to the antigen.
    • Pros: Can be used to target many different antigens.
    • Cons: Usually produce antibodies with moderate affinity.
  3. Synthetic and semi-synthetic libraries – built entirely in the lab using DNA synthesis.
    • Pros: Fully customizable, no need for donors or immunization.
    • Cons: Require advanced design and synthesis tools.


Are there mice that produce human antibodies?

Yes

RenMab and RenLite are humanized mouse platforms developed by Biocytogen for therapeutic antibody discovery. Both generate fully human antibodies, but they differ in design and applications. RenMab mice have their heavy chain (VH) and light chain (VL) loci fully replaced with human sequences, providing complete diversity in both chains. This makes RenMab ideal for discovering monospecific, high-affinity antibodies against a wide range of targets. B cells from immunized RenMab mice produce unique VH and VL combinations, resulting in antibodies with diverse antigen-binding sites.

RenLite, in contrast, is optimized for bispecific antibody discovery. It has a fully human heavy chain repertoire but uses a single common kappa (κ) light chain for all B cells. Each antibody arm still has six CDRs (three from VH, three from the shared VL), but the heavy chain drives binding diversity. The common light chain ensures correct heavy/light chain pairing when combining two arms into a bispecific antibody, reducing mispairing and simplifying manufacturing. However, this is a different method from CrossMab.


You might visit and see the scientific papers: 
Christopher Thomas Schott, 2007 
Nils Lonberg and Dennis Huszar, 1995
Kazuto Shimmoya et al., 2004


How Are Antibody Libraries Screened?

Once a library is created, scientists use display technologies to “show” the antibodies to their target antigens in a process called biopanning. This helps identify the strongest binders.

The most common display systems include

  • Phage display: antibodies are shown on the surface of viruses that infect bacteria.
  • Yeast display: antibodies are presented on yeast cells, allowing researchers to work with full-length antibodies (closer to therapeutic ones).


Guide to Antibody Libraries | Biocompare.com

Visual Acuity

You hear something like 20/20, 20/100 etc.

Visual acuity measures how well you can see fine details. It’s tested using an eye chart – the one with big letters on top and smaller letters below.

What two numbers mean:

ExampleMeaning
20/20You see at 20 feet what a normal eye can see at 20 feet (normal vision).
20/40You be 20 feet away to see what a normal eye see at 40 feet (can drive with restriction).
20/200You must be 20 feet away to see what a normal eye can see at 200 feet (Legal blindness- US)
20/800You must be 20 feet away to see what a normal eye can see at 800 feet (Very poor vision, only large shapes)
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