AAV Serotypes for Intravenous Gene Therapy (1)

Today, I wrote a bit about AAV serotypes and doses, and target organs, inspired after reading Reporter’s notebook 

CAP-002 case

clinical fatalities and the limits of IV-delivery

A child died in Capsida’s CAP-002 trial in September 2025,  the first patient treated with an engineered, IV-administered, BBB-crossing AAV for STXBP1 encephalopathy. 

Capsida Biotherapeutics voluntarily halted the SYNRGY trial (NCT06983158) after the first treated paediatric patient with developmental and epileptic encephalopathy (DEE) caused by STXBP1 mutations, died. The cause of death remains under investigation. CAP-002 is notable because its capsid was specifically engineered to cross the blood-brain barrier (BBB) via IV infusion, without intracranial injection. Regulators did not enforce the hold. However, Capsida self-imposed it while searching for the root cause.👍


Now, we should check some adverse events linked to IV AAVs. 

Reported patient deaths linked to IV AAV by serotype
SerotypeDrug / companyIndicationCause of deathStatus
AAV9Zolgensma (Novartis)Spinal muscular atrophy (SMA)Acute liver failure (ALF)2 deaths, 2022 (Zhang et al.)
AAV9Multiple high-dose trialsVarious CNS / neuromuscularThrombotic microangiopathy (TMA)Multiple cases (Zhang et al.)
AAV9 (NGN-40)NeurogeneRett syndromeRare hyperinflammatory syndrome1 deathPhase I/II (Joshua Silverwood)
AAV9-based (RP-A501)Rocket PharmaceuticalsDanon diseaseFatal acute systemic infection1 death, Phase II (Annabel Kartal Allen)
AAV8ASPIRO trial (AT132)X-linked myotubular myopathy (XLMM)Cholestatic liver failure4 deathsPhase I/II (Shieh et al.)
AAVrh74Elevidys (Sarepta)Duchenne muscular dystrophyAcute liver failure3 deaths (Annabel Kartal Allen)
Engineered AAV (CAP-002)Capsida BiotherapeuticsSTXBP1 encephalopathyUnknown — under investigation1 death, Sept 2025 (Annabel Kartal Allen)

What the AAV5 story teaches us

Now, we have to think about AAV5’s successful story. A decade of relative safety, why?

In August 2022, Europe approved the world’s first AAV5-based gene therapy for severe hemophilia A – Roctavian (valoctocogene roxaparvovec), developed by BioMarin. The FDA followed in June 2023. Since Phase 1/2 trials began in the mid-2010s, hundreds of patients have received a single IV infusion of AAV5, and to date, no patient deaths have been directly attributed to the therapy. In a field where other AAV programs have seen multiple fatalities, this is a notable record.

Hemophilia A is caused by a missing clotting protein (Factor VIII) that is normally made in the liver. So the therapeutic goal of Roctavian is simply to deliver a working gene to liver cells  and the liver happens to be exactly where AAV naturally travels after an IV injection. The vector does not need to fight its way past any biological barriers. It goes where it was always going to go.

So what makes AAV5 different? The answer is not the stereotype itself [I think, and some others would agree with me although it is some part of stories].  


The dose matters. 

Because the liver is the natural destination for IV-delivered AAV5-based gene therapies, a relatively modest dose is enough to achieve a therapeutic effect in hemophilia. Roctavian is given at 4–6 × 10¹³ vg/kg, roughly half to a third of the doses used in CNS or muscle-targeting programs. That difference in dose is, in large part, the difference between a therapy with an acceptable safety profile and one that has killed patients.

Why does the target organ change everything?

Think of it this way. When you give AAV through an IV, the vector enters the bloodstream and travels throughout the body. The liver acts like a sponge as always. It absorbs a large fraction of whatever AAV is circulating, regardless of where the doctor wants it to go. This is simply how our body works.

For hemophilia, this is actually favorable: you want the gene delivered to liver cells, and the liver is already soaking it up. A dose of 4–6 × 10¹³ vg/kg is enough to transduce enough liver cells to restore Factor VIII production. The liver handles this dose without triggering a dangerous immune response in most patients.

But for diseases of the brain or muscle, the liver is an obstacle, not a destination. To get enough AAV past the blood-brain barrier or into muscle tissue, you have to flood the entire system with a much larger dose, often 2 to 10 times higher. The liver still absorbs most of it, now overwhelmed by vectors it was never meant to receive in such quantities. The result, in the worst cases, is acute liver failure, immune storms, or vascular damage.

The safety record of AAV5 in hemophilia is genuinely encouraging, but it would be a mistake to conclude that AAV5 is simply a “safe” serotype. The real lesson is more specific and more important: IV gene therapy works best and most safely when the target organ is the liver. AAV5 has never been tested at the doses that CNS or muscle delivery would require, so we simply do not know how it would perform in that context.

What the full clinical picture tells us is that the moment gene therapy asks AAV to travel beyond the liver via IV, the dose requirements climb into a range where serious toxicity and death become real risks regardless of which serotype is used. AAV8, AAV9, and AAVrh74 have all produced fatal outcomes in this higher dose regime. Engineered capsids designed to cross the blood-brain barrier represent the field’s attempt to break this trade-off, but as the September 2025 death in Capsida’s trial shows, even the most advanced designed next-generation vectors carry unknowns that only human trials can reveal [The dose not disclosed yet]

A lower dose of IV gene therapy targeting other organs might be successful, which underscores the need for more efficient AAV engineering or local injection to resolve these matters.


Reference

Annabel Kartal Allen. “Child Dies in Phase I Capsida Gene Therapy Trial.” Child Dies in Phase I Capsida Gene Therapy Trial, Clinicaltrialsarena, 12 Sept. 2025″

Joshua Silverwood. “Patient Dies in Neurogene’s Phase I/II Rett Syndrome Trial.” Patient Dies in Neurogene’s Phase I/II Rett Syndrome Trial, Clinicaltrialsarena, 22 Nov. 2024″

Shieh, Perry B., et al. “Safety and Efficacy of Gene Replacement Therapy for X-Linked Myotubular Myopathy (ASPIRO): A Multinational, Open-Label, Dose-Escalation Trial.” The Lancet Neurology, vol. 22, no. 12, Dec. 2023, pp. 1125–39. DOI.org (Crossref)

Zhang, Wenwen, et al. “Comprehensive Analysis of Adverse Events Associated with Onasemnogene Abeparvovec (Zolgensma) in Spinal Muscular Atrophy Patients: Insights from FAERS Database.” Frontiers in Pharmacology, vol. 15, Jan. 2025, p. 1475884.

Personalized gene-editing

KJ Muldoon (infant) is the first person in the world who received  in vivo gene-editing therapy making medical history in 2025. It was made at Children’s Hospital of Philadelphia/Penn Medicine. 

KJ was born with a rare metabolic disorder known as severe carbamoyl phosphate synthetase 1 (CPS1) deficiency, a life-threatening metabolic disorder that impairs the body’s ability to clear ammonia. 

Genetic analysis revealed that KJ inherited two distinct truncating (nonsense premature stop) variants in the CPS1 gene: Q335X (it means Glutamine into Stop codon at the site of CDS 335) and E714X (glutamic acid into stop codon at CDS 714). If you want to see the variant details about this mutation, click here:

A team led by Drs. Rebecca Ahrens-Nicklas and Kiran Musunuru developed a therapy delivered via lipid nanoparticles to the liver that uses a base-editing CRISPR. The first dose was administered in February 2025 (at 6-7 months old) and followed by further escalating doses in March and April (7-8 months old). 

The team chose to target one of the two mutants (rather than both), and selected the Q335X variant for the adenine base editing (A—>G conversion). Maybe this is a good strategy because of off-targets and bystand targets.

Doctors reported that the treatment was successful in correcting the genetic defect and reducing ammonia levels in KJ’s blood. He was able to go home from the hospital in June 2025 and is currently thriving. 

We do not know editing efficiency, off-target and by-stand target rate, but saved a life. 

For more detailed news, please click here

(biotech news) Personalized CRISPR startup, Aurora, Jan 9 2026

Poem Book—Returning to Origins—Free

Last time when I visited Korea, one of my sunbaes (college seniors) told me that even startups need practice (she is a CEO of Biotech CRO) and practice with any kind of business. I thought about what I could do. That was making books, since I already had personal notes. However, I did not know how to get ISBNs, how to calculate cover thicknesses, how to choose papers, or where to print and sell books.

In Korea, I used Indipub for distribution. Actually, I arranged for the printed book to be delivered directly to the Indipub’s office. In the US, I used Amazon KDP to publish a poem book, both as an eBook and in print. Printing price is cheaper in the US than in Korea, but the quality and variety are limited in the US.

This year, I tried creating children’s picture books using Pages and JPEG images by exporting as ePub. While I worked on them, I realized that JPEG (file size) is smaller than PNG, and iBooks does not support any more ePub previews, so I used Cradle instead of iBooks. I just published two books through Amazon KDP and Barnes & Noble. One book was by my first daughter, and the other by my second daughter. I hope to continue supporting other kids to publish their own books. Writing and publishing seem to help them grow and become more thoughtful about the world around them.

Furthermore, working together with my kids makes me happy and helps me learn more and allows me to better understand how the world works and how the world changes quickly. Today, I discovered how to make eBooks available for free. At Amazon KDP, authors can not offer their books for free all the time, but through KDP, we can make them free 5 days within a 90-day period.

From today, Sep27 to Sep 30, the book, Returning to Origins, is free : https://a.co/d/cIdHYP5

Thanks

Published a book of poetry, returning to origins

Last summer, I had English class at MiraCosta. The lecture/class was led by Professor Donna Fazio DiBenedetto.

The class started with a few quotes. One of them was:

“The scariest moment is always just before you start. After that, things can only get better.” ~ Stephen King

“I do believe writing is thinking. Sometimes we can’t untangle what’s happening in our brains, but we get our pen moving and all of a sudden, as we write, we figure it out.” —Elizabeth AcevedoLinks to an external site.

One of the main books that we should read was “Siddahartha by Herman Hesse”.

While taking classes, I looked back myself, turned to my past, and started looking through old poems that I wrote quite long ago, and finally, I decided to share them with others.

In Korea, I published a book titled 원점 at a small independent bookstore, INDIEPUB.

In the USA, I published it as an ebook and a paper book, titled Returning to Origins at Amazon

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